import os
import warnings
import traceback
from functools import wraps
from glue.core.data import Subset
from glue.core.session import Session
from glue.core.hub import HubListener
from glue.core import BaseData
from glue.core.data_factories import load_data
from glue.core.data_collection import DataCollection
from glue.config import settings
__all__ = ['Application']
def catch_error(msg):
def decorator(func):
@wraps(func)
def wrapper(*args, **kwargs):
try:
return func(*args, **kwargs)
except Exception as e:
m = "%s\n%s" % (msg, str(e))
detail = str(traceback.format_exc())
self = args[0]
self.report_error(m, detail)
return wrapper
return decorator
def as_flat_data_list(data):
datasets = []
if isinstance(data, BaseData):
datasets.append(data)
else:
for d in data:
datasets.extend(as_flat_data_list(d))
return datasets
[docs]class Application(HubListener):
def __init__(self, data_collection=None, session=None):
if session is not None:
self._session = session
session.application = self
self._data = session.data_collection
else:
self._data = data_collection or DataCollection()
self._session = Session(data_collection=self._data,
application=self)
self._hub = self._session.hub
self._cmds = self._session.command_stack
self._cmds.add_callback(self._update_undo_redo_enabled)
self._settings = {}
for key, value, validator in settings:
self._settings[key] = [value, validator]
[docs] @property
def session(self):
return self._session
[docs] @property
def data_collection(self):
return self.session.data_collection
[docs] def new_data_viewer(self, viewer_class, data=None, state=None):
"""
Create a new data viewer, add it to the UI, and populate with data.
"""
if viewer_class is None:
return
if state is not None:
c = viewer_class(self._session, state=state)
else:
c = viewer_class(self._session)
c.register_to_hub(self._session.hub)
if data is not None:
if isinstance(data, BaseData):
result = c.add_data(data)
elif isinstance(data, Subset):
result = c.add_subset(data)
if not result:
c.close(warn=False)
return
self.add_widget(c)
return c
[docs] @catch_error("Failed to save session")
def save_session(self, path, include_data=False, absolute_paths=True):
"""
Save the data collection and hub to file.
Can be restored via restore_session.
Note: Saving of client is not currently supported. Thus,
restoring this session will lose all current viz windows.
"""
from glue.core.state import GlueSerializer
gs = GlueSerializer(self,
include_data=include_data,
absolute_paths=absolute_paths)
# In case relative paths are needed in the session file, we do the
# serialization while setting the current directory to the directory
# in which the session file will be saved so that the relative paths
# are relative to the session file, not the current working directory.
start_dir = os.path.abspath('.')
session_dir = os.path.dirname(path) or '.'
try:
os.chdir(session_dir)
state = gs.dumps(indent=2)
finally:
os.chdir(start_dir)
with open(path, 'w') as out:
out.write(state)
[docs] @staticmethod
def restore_session(path):
"""
Reload a previously-saved session
Parameters
----------
path : `str`
Path to the file to load.
Returns
-------
app : :class:`Application`
The loaded application.
"""
from glue.core.state import GlueUnSerializer
# In case relative paths are needed in the session file, we do the
# loading while setting the current directory to the directory
# in which the session file is so that relative paths are interpreted
# as relative to the session file.
start_dir = os.path.abspath('.')
session_dir = os.path.dirname(path) or '.'
session_file = os.path.basename(path)
try:
os.chdir(session_dir)
with open(session_file) as infile:
state = GlueUnSerializer.load(infile)
return state.object('__main__')
finally:
os.chdir(start_dir)
[docs] def get_setting(self, key):
"""
Fetch the value of an application setting
"""
return self._settings[key][0]
[docs] def set_setting(self, key, value):
"""
Set the value of an application setting
Raises
------
KeyError, if the setting does not exist.
ValueError, if the value is invalid.
"""
validator = self._settings[key][1]
self._settings[key][0] = validator(value)
[docs] @property
def settings(self):
"""Iterate over settings"""
for key, (value, _) in self._settings.items():
yield key, value
[docs] @catch_error("Could not load data")
def load_data(self, paths, auto_merge=False, **kwargs):
"""
Given a path to a file, load the file as a Data object and add it to
the current session.
This returns the added `Data` object.
"""
if isinstance(paths, str):
paths = [paths]
datasets = []
for path in paths:
result = load_data(path)
if isinstance(result, BaseData):
datasets.append(result)
else:
datasets.extend(result)
self.add_datasets(datasets, auto_merge=auto_merge, **kwargs)
if len(datasets) == 1:
return datasets[0]
else:
return datasets
[docs] @catch_error("Could not add data")
def add_data(self, *args, **kwargs):
"""
Add data to the session.
Positional arguments are interpreted using the data factories, while
keyword arguments are interpreted using the same infrastructure as the
`qglue` command.
This returns a list of added `Data` objects.
"""
datasets = []
for path in args:
if isinstance(path, BaseData):
datasets.append(path)
else:
datasets.append(load_data(path))
links = kwargs.pop('links', None)
from glue.core.parsers import parse_data, parse_links
for label, data in kwargs.items():
datasets.extend(parse_data(data, label))
self.add_datasets(datasets)
if links is not None:
self.data_collection.add_link(parse_links(self.data_collection, links))
return datasets
[docs] def report_error(self, message, detail):
"""
Report an error message to the user.
Must be implemented in a subclass.
Parameters
----------
message : `str`
The message to display.
detail : `str`
Longer context about the error.
"""
raise Exception(message + "(" + detail + ")")
[docs] def do(self, command):
return self._cmds.do(command)
[docs] def undo(self):
try:
self._cmds.undo()
except RuntimeError:
pass
[docs] def redo(self):
try:
self._cmds.redo()
except RuntimeError:
pass
def _update_undo_redo_enabled(self, *args):
pass
[docs] def add_datasets(self, *args, **kwargs):
"""
Utility method to interactively add datasets to the data_collection.
Parameters
----------
datasets : :class:`~glue.core.data.Data` or `list` thereof
One or more :class:`~glue.core.data.Data` instances.
Adds datasets to the collection in the application.
"""
if isinstance(args[0], DataCollection):
warnings.warn("Calling add_datasets with an explicit data "
"collection is now deprecated. You should now call "
"app.add_datasets(datasets).", UserWarning)
data_collection, datasets = args
else:
data_collection = self.data_collection
datasets = args[0]
if "skip_merge" in kwargs:
warnings.warn("The skip_merge= argument now no longer has any "
"effect and is deprecated, since no merging is done "
"by default", UserWarning)
auto_merge = kwargs.pop('auto_merge', False)
datasets = as_flat_data_list(datasets)
data_collection.extend(datasets)
# We now automatically merge the datasets if requested. However, we only
# do this if all the datasets have the same shape to avoid confusion.
if auto_merge and len(datasets) > 1:
reference_shape = datasets[0].shape
if all([data.shape == reference_shape for data in datasets[1:]]):
suggested_label = data_collection.suggest_merge_label(*datasets)
return data_collection.merge(*datasets, label=suggested_label)
else:
raise ValueError("Can only auto-merge datasets if they all have "
" the same shape")
else:
return datasets
@staticmethod
def _choose_merge(data, other, suggested_label):
"""
Present an interface to the user for approving or rejecting
a proposed data merger. Returns a list of datasets from other
that the user has approved to merge with data
"""
raise NotImplementedError
[docs] @property
def viewers(self):
"""
Return a tuple of tuples of viewers currently open.
"""
return []
[docs] def set_data_color(self, color, alpha):
"""
Reset all the data colors to that specified.
"""
for data in self.data_collection:
data.style.color = color
data.style.alpha = alpha
def __gluestate__(self, context):
viewers = [list(map(context.id, tab)) for tab in self.viewers]
data = self.session.data_collection
from glue.main import _loaded_plugins
return dict(session=context.id(self.session), viewers=viewers,
data=context.id(data), plugins=_loaded_plugins)
@classmethod
def __setgluestate__(cls, rec, context):
self = cls(data_collection=context.object(rec['data']))
# manually register the newly-created session, which
# the viewers need
context.register_object(rec['session'], self.session)
for i, tab in enumerate(rec['viewers']):
if self.tab(i) is None:
self.new_tab()
for v in tab:
viewer = context.object(v)
self.add_widget(viewer, tab=i, hold_position=True)
return self
